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In recent decades the Replacement Theory has been the common wisdom in the field. It had firmer archaeological backing, and was more politically correct (scientists had no desire to open up the Pandora’s box of racism by claiming significant genetic diversity among modern human populations). But that ended in 2010, when the results of a four-year effort to map the Neanderthal genome were published. Geneticists were able to collect enough intact Neanderthal DNA from fossils to make a broad comparison between it and the DNA of contemporary humans. The results stunned the scientific community.

It turned out that 1–4 per cent of the unique human DNA of modern populations in the Middle East and Europe is Neanderthal DNA. That’s not a huge amount, but it’s significant. A second shock came several months later, when DNA extracted from the fossilised finger from Denisova was mapped. The results proved that up to 6 per cent of the unique human DNA of modern Melanesians and Aboriginal Australians is Denisovan DNA.

If these results are valid – and it’s important to keep in mind that further research is under way and may either reinforce or modify these conclusions – the Interbreeders got at least some things right. But that doesn’t mean that the Replacement Theory is completely wrong. Since Neanderthals and Denisovans contributed only a small amount of DNA to our present-day genome, it is impossible to speak of a ‘merger’ between Sapiens and other human species. Although differences between them were not large enough to completely prevent fertile intercourse, they were sufficient to make such contacts very rare.

How then should we understand the biological relatedness of Sapiens, Neanderthals and Denisovans? Clearly, they were not completely different species like horses and donkeys. On the other hand, they were not just different populations of the same species, like bulldogs and spaniels. Biological reality is not black and white. There are also important grey areas. Every two species that evolved from a common ancestor, such as horses and donkeys, were at one time just two populations of the same species, like bulldogs and spaniels. There must have been a point when the two populations were already quite different from one another, but still capable on rare occasions of having sex and producing fertile offspring. Then another mutation severed this last connecting thread, and they went their separate evolutionary ways.

It seems that about 50,000 years ago, Sapiens, Neanderthals and Denisovans were at that borderline point. They were almost, but not quite, entirely separate species. As we shall see in the next chapter, Sapiens were already very different from Neanderthals and Denisovans not only in their genetic code and physical traits, but also in their cognitive and social abilities, yet it appears it was still just possible, on rare occasions, for a Sapiens and a Neanderthal to produce a fertile offspring. So the populations did not merge, but a few lucky Neanderthal genes did hitch a ride on the Sapiens Express. It is unsettling – and perhaps thrilling – to think that we Sapiens could at one time have sex with an animal from a different species, and produce children together.

3. A speculative reconstruction of a Neanderthal child. Genetic evidence hints that at least some Neanderthals may have had fair skin and hair.

But if the Neanderthals, Denisovans and other human species didn’t merge with Sapiens, why did they vanish? One possibility is that Homo sapiens drove them to extinction. Imagine a Sapiens band reaching a Balkan valley where Neanderthals had lived for hundreds of thousands of years. The newcomers began to hunt the deer and gather the nuts and berries that were the Neanderthals’ traditional staples. Sapiens were more proficient hunters and gatherers – thanks to better technology and superior social skills – so they multiplied and spread. The less resourceful Neanderthals found it increasingly difficult to feed themselves. Their population dwindled and they slowly died out, except perhaps for one or two members who joined their Sapiens neighbours.

Another possibility is that competition for resources flared up into violence and genocide. Tolerance is not a Sapiens trademark. In modern times, a small difference in skin colour, dialect or religion has been enough to prompt one group of Sapiens to set about exterminating another group. Would ancient Sapiens have been more tolerant towards an entirely different human species? It may well be that when Sapiens encountered Neanderthals, the result was the first and most significant ethnic-cleansing campaign in history.

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