Iyer, L. M., K. S. Makarova, E. V. Koonin, and L. Aravind. (2004b) Comparative Genomics of the Ftsk-Hera Superfamily of Pumping Atpases: Implications for the Origins of Chromosome Segregation, Cell Division and Viral Capsid Packaging. Nucleic Acids Res 32: 5,260—5,279.
Jacob, F. (1977) Evolution and Tinkering. Science 196: 1,161—1,166.
Jacob, F. (1993). The Logic of Life. Princeton: Princeton University Press.
Jacob, F., and J. Monod. (1961) Genetic Regulatory Mechanisms in the Synthesis of Proteins. J Mol Biol 3: 318–356.
Jain, R., M. C. Rivera, and J. A. Lake. (1999) Horizontal Gene Transfer Among Genomes: The Complexity Hypothesis. Proc Natl Acad Sci USA 96: 3,801—3,806.
Jeffares, D. C., T. Mourier, and D. Penny. (2006) The Biology of Intron Gain and Loss. Trends Genet 22: 16–22.
Jensen, L. J., P. Julien, M. Kuhn, C. von Mering, J. Muller, T. Doerks, and P. Bork. (2008) Eggnog: Automated Construction and Annotation of Orthologous Groups of Genes. Nucleic Acids Res 36: D250—254.
Johansson, M., M. Lovmar, and M. Ehrenberg. (2008) Rate and Accuracy of Bacterial Protein Synthesis Revisited. Curr Opin Microbiol 11: 141–147.
Johnson, L. J., and P. J. Tricker. (2010) Epigenomic Plasticity Within Populations: Its Evolutionary Significance and Potential. Heredity 105: 113–121.
Johnson, N. (2009) Simply Complexity: A Clear Guide to Complexity Theory. New York: Oneworld Publications.
Johnston, W. K., P. J. Unrau, M. S. Lawrence, M. E. Glasner, and D. P. Bartel. (2001) RNA-Catalyzed Rna Polymerization: Accurate and General RNA-Templated Primer Extension. Science 292: 1,319—1,325.
Jordan, I. K., K. S. Makarova, J. L. Spouge, Y. I. Wolf, and E. V. Koonin. (2001) Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes. Genome Res 11: 555–565.
Jordan, I. K., L. Marino-Ramirez, Y. I. Wolf, and E. V. Koonin. (2004) Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network. Mol Biol Evol 21: 2,058—2,070.
Jordan, I. K., I. B. Rogozin, Y. I. Wolf, and E. V. Koonin. (2002) Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria. Genome Res 12: 962–968.
Juhas, M., J. R. van der Meer, M. Gaillard, R. M. Harding, D. W. Hood, and D. W. Crook. (2009) Genomic Islands: Tools of Bacterial Horizontal Gene Transfer and Evolution. FEMS Microbiol Rev 33: 376–393.
Kaneko, K. (2007) Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics. PLoS One 2: e434.
Karev, G. P., Y. I. Wolf, A. Y. Rzhetsky, F. S. Berezovskaya, and E. V. Koonin. (2002) Birth and Death of Protein Domains: A Simple Model of Evolution Explains Power Law Behavior. BMC Evol Biol 2: 18.
Karginov, F. V., and G. J. Hannon. (2010) The CRISPR System: Small RNA-Guided Defense in Bacteria and Archaea. Mol Cell 37: 7—19.
Kasting, J. F., and S. Ono. (2006) Palaeoclimates: The First Two Billion Years. Philos Trans R Soc Lond B Biol Sci 361: 917–929.
Kauffman, S. (1996) At Home in the Universe: The Search for the Laws of Self-Organization and Complexity. Oxford: Oxford University Press.
Keating, K. S., N. Toor, P. S. Perlman, and A. M. Pyle. (2010) A Structural Analysis of the Group II Intron Active Site and Implications for the Spliceosome. RNA 16: 1–9.
Keeling, P. J. (2007) Genomics. Deep Questions in the Tre of Life. Science 317: 1,875—1,876.
Keeling, P. J., G. Burger, D. G. Durnford, B. F. Lang, R. W. Lee, R. E. Pearlman, A. J. Roger, and M. W. Gray. (2005) The Tree of Eukaryotes. Trends Ecol Evol 20: 670–676.
Keeling, P. J., and J. D. Palmer. (2008) Horizontal Gene Transfer in Eukaryotic Evolution. Nat Rev Genet 9: 605–618.
Keiler, K. C. (2008) Biology of Trans-Translation. Annu Rev Microbiol 62: 133–151.