Delaye, L., and A. Moya. (2010) Evolution of Reduced Prokaryotic Genomes and the Minimal Cell Concept: Variations on a Theme. Bioessays 32: 281–287.
Deleuze, G., and F. Guattari. (1987) Thousand Plateaus: Capitalism and Schizophrenia. Minneapolis, MN: University of Minnesota Press.
Denamur E. and I. Matic. (2006) Evolution of Mutation Rates in Bacteria. Mol Microbiol 60: 820–827.
Dennett, D. C. (1996) Darwin‘s Dangerous Idea: Evolution and the Meanings of Life. New York: Simon & Schuster.
Deppenmeier, U., A. Johann, T. Hartsch, R. Merkl, R. A. Schmitz, R. Martinez-Arias, A. Henne, A. Wiezer, S. Baumer, C. Jacobi, H. Bruggemann, T. Lienard, A. Christmann, M. Bomeke, S. Steckel, A. Bhattacharyya, A. Lykidis, R. Overbeek, H. P. Klenk, R. P. Gunsalus, H. J. Fritz, and G. Gottschalk. (2002) The Genome of Methanosarcina Mazei: Evidence for Lateral Gene Transfer Between Bacteria and Archaea. J Mol Microbiol Biotechnol 4: 453–461.
Deveau, H., J. E. Garneau, and S. Moineau. (2010) CRISPR/Cas System and Its Role in Phage-Bacteria Interactions. Annu Rev Microbiol 64: 475–493.
Diaz, R., C. Vargas-Lagunas, M. A. Villalobos, H. Peralta, Y. Mora, S. Encarnacion, L. Girard, and J. Mora. (2011) argC Orthologs from Rhizobiales Show Diverse Profiles of Transcriptional Efficiency and Functionality in Sinorhizobium Meliloti. J Bacteriol 193: 460–472.
Ding, S. W. (2010) RNA-Based Antiviral Immunity. Nat Rev Immunol 10: 632–644.
Dlakic, M. and A. Mushegian. (2011) Prp8, the Pivotal Protein of the Spliceosomal Catalytic Center, Evolved from a Retroelement-Encoded Reverse Transcriptase. RNA [Epub ahead of print].
Dobzhansky, T. (1951). Genetics and the Origin of Species. New York: Columbia University Press.
Dobzhansky, T. (1973) Nothing in Biology Makes Sense Except in the Light of Evolution. The American Biology Teacher 35: 125–129.
Dong, H., and C. G. Kurland. (1995) Ribosome Mutants with Altered Accuracy Translate with Reduced Processivity. J Mol Biol 248: 551–561.
Doolittle, R. F. (1995) The Multiplicity of Domains in Proteins. Annu Rev Biochem 64: 287–314.
Doolittle, W. F. (1999a) Lateral Genomics. Trends Cell Biol 9: M5—8.
Doolittle, W. F. (1999b) Phylogenetic Classification and the Universal Tree. Science 284: 2,124—2,129.
Doolittle, W. F. (2000) Uprooting the Tree of Life. Sci Am 282: 90–95.
Doolittle, W. F., and E. Bapteste. (2007) Pattern Pluralism and the Tree of Life Hypothesis. Proc Natl Acad Sci USA 104: 2,043—2,049.
Doolittle, W. F., and J. R. Brown. (1994) Tempo, Mode, the Progenote, and the Universal Root. Proc Natl Acad Sci USA 91: 6,721—6,728.
Doolittle, W. F., and C. Sapienza. (1980) Selfish Genes, the Phenotype Paradigm and Genome Evolution. Nature 284: 601–603.
Doolittle, W. F., and O. Zhaxybayeva. (2009) On the Origin of Prokaryotic Species. Genome Res 19: 744–756.
Doudna, J. A., and T. R. Cech. (2002) The Chemical Repertoire of Natural Ribozymes. Nature 418: 222–228.
Douzery, E. J., E. A. Snell, E. Bapteste, F. Delsuc, and H. Philippe. (2004) The Timing of Eukaryotic Evolution: Does a Relaxed Molecular Clock Reconcile Proteins and Fossils? Proc Natl Acad Sci USA 101: 15,386—15,391.
Draghi, J. A., T. L. Parsons, G. P. Wagner, and J. B. Plotkin. (2010) Mutational Robustness Can Facilitate Adaptation. Nature 463: 353–355.
Drake, J. W. (1991) A Constant Rate of Spontaneous Mutation in DNA-Based Microbes. Proc Natl Acad Sci USA 88: 7,160—7,164.
Drake, J. W., and J. J. Holland. (1999) Mutation Rates Among RNA Viruses. Proc Natl Acad Sci USA 96: 13,910—13,913.
Dronamraju, K. R., ed. (1968) Haldane and Modern Biology. Baltimore, Johns Hopkins University Press.
